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Tag

#genomics

3 articles tagged #genomics

arxivApr 8

PhageBench: Can LLMs Understand Raw Bacteriophage Genomes?

arXiv:2604.05775v1 Announce Type: new Abstract: Bacteriophages, often referred to as the dark matter of the biosphere, play a critical role in regulating microbial ecosystems and in antibiotic alternatives. Thus, accurate interpretation of their genomes holds significant scientific and practical val

LA1 model#genomics#benchmark#biological sequencesRead on arxiv →
arxivApr 3bullish

annbatch unlocks terabyte-scale training of biological data in anndata

arXiv:2604.01949v1 Announce Type: new Abstract: The scale of biological datasets now routinely exceeds system memory, making data access rather than model computation the primary bottleneck in training machine-learning models. This bottleneck is particularly acute in biology, where widely used commu

#machine-learning#genomics#scalabilityRead on arxiv →
arxivApr 2

Event Embedding of Protein Networks : Compositional Learning of Biological Function

arXiv:2604.00911v1 Announce Type: new Abstract: In this work, we study whether enforcing strict compositional structure in sequence embeddings yields meaningful geometric organization when applied to protein-protein interaction networks. Using Event2Vec, an additive sequence embedding model, we trai

EVWO2 models#protein-protein interaction networks#sequence embeddings#machine learningRead on arxiv →
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